From: Cord blood platelet-rich plasma: proteomics analysis for ophthalmic applications
Pathway identifier | Pathway name | #Entities found | #Entities total | Entities FDR |
---|---|---|---|---|
R-HSA-2168880 | Scavenging of heme from plasma | 25 | 99 | 4,33E-15 |
R-HSA-166786 | Creation of C4 and C2 activators | 25 | 103 | 4,33E-15 |
R-HSA-173623 | Classical antibody-mediated complement activation | 23 | 95 | 4,33E-15 |
R-HSA-166658 | Complement cascade | 48 | 146 | 4,33E-15 |
R-HSA-977606 | Regulation of Complement cascade | 46 | 135 | 4,33E-15 |
R-HSA-166663 | Initial triggering of complement | 28 | 111 | 4,33E-15 |
R-HSA-2173782 | Binding and Uptake of Ligands by Scavenger Receptors | 31 | 129 | 4,33E-15 |
R-HSA-140877 | Formation of Fibrin Clot (Clotting Cascade) | 20 | 39 | 4,33E-15 |
R-HSA-114608 | Platelet degranulation | 50 | 128 | 4,33E-15 |
R-HSA-76005 | Response to elevated platelet cytosolic Ca2 + | 50 | 133 | 4,33E-15 |
R-HSA-109582 | Hemostasis | 85 | 726 | 4,33E-15 |
R-HSA-76002 | Platelet activation, signaling and aggregation | 55 | 265 | 4,33E-15 |
R-HSA-168249 | Innate Immune System | 85 | 1197 | 4,33E-15 |
R-HSA-168256 | Immune System | 97 | 2188 | 4,33E-15 |
R-HSA-140875 | Common Pathway of Fibrin Clot Formation | 13 | 22 | 2,88E-14 |
R-HSA-140837 | Intrinsic Pathway of Fibrin Clot Formation | 13 | 23 | 4,91E-14 |
R-HSA-381426 | Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs) | 22 | 124 | 1,63E-13 |
R-HSA-5690714 | CD22 mediated BCR regulation | 17 | 70 | 1,61E-12 |
R-HSA-2029481 | FCGR activation | 19 | 101 | 4,16E-12 |
R-HSA-2029482 | Regulation of actin dynamics for phagocytic cup formation | 22 | 150 | 5,94E-12 |
R-HSA-8957275 | Post-translational protein phosphorylation | 19 | 107 | 1,01E-11 |
R-HSA-2029485 | Role of phospholipids in phagocytosis | 19 | 114 | 2,89E-11 |
R-HSA-2029480 | Fcgamma receptor (FCGR) dependent phagocytosis | 22 | 175 | 1,04E-10 |
R-HSA-166665 | Terminal pathway of complement | 8 | 8 | 1,17E-10 |
R-HSA-983695 | Antigen activates B Cell Receptor (BCR) leading to generation of second messengers | 17 | 95 | 1,36E-10 |
R-HSA-9664323 | FCGR3A-mediated IL10 synthesis | 19 | 128 | 1,74E-10 |
R-HSA-202733 | Cell surface interactions at the vascular wall | 25 | 246 | 2,45E-10 |
R-HSA-9664417 | Leishmania phagocytosis | 20 | 149 | 2,45E-10 |
R-HSA-9664407 | Parasite infection | 20 | 149 | 2,45E-10 |
R-HSA-9664422 | FCGR3A-mediated phagocytosis | 20 | 149 | 2,45E-10 |
R-HSA-9664433 | Leishmania parasite growth and survival | 20 | 168 | 1,86E-09 |
R-HSA-9662851 | Anti-inflammatory response favouring Leishmania parasite infection | 20 | 168 | 1,86E-09 |
R-HSA-8963898 | Plasma lipoprotein assembly | 9 | 19 | 2,65E-09 |
R-HSA-2730905 | Role of LAT2/NTAL/LAB on calcium mobilization | 16 | 102 | 2,82E-09 |
R-HSA-76009 | Platelet Aggregation (Plug Formation) | 11 | 40 | 6,74E-09 |
R-HSA-9679191 | Potential therapeutics for SARS | 19 | 164 | 7,65E-09 |
R-HSA-372708 | p130Cas linkage to MAPK signaling for integrins | 8 | 15 | 9,06E-09 |
R-HSA-354194 | GRB2:SOS provides linkage to MAPK signaling for Integrins | 8 | 15 | 9,06E-09 |
R-HSA-9651496 | Defects of contact activation system (CAS) and kallikrein/kinin system (KKS) | 8 | 16 | 1,49E-08 |
R-HSA-9671793 | Diseases of hemostasis | 8 | 16 | 1,49E-08 |
R-HSA-2871809 | FCERI mediated Ca + 2 mobilization | 16 | 117 | 1,55E-08 |
R-HSA-8963888 | Chylomicron assembly | 7 | 10 | 1,55E-08 |
R-HSA-8963901 | Chylomicron remodeling | 7 | 10 | 1,55E-08 |
R-HSA-2871796 | FCERI mediated MAPK activation | 16 | 119 | 1,88E-08 |
R-HSA-8963899 | Plasma lipoprotein remodeling | 10 | 35 | 2,16E-08 |
R-HSA-8964058 | HDL remodeling | 7 | 11 | 2,73E-08 |
R-HSA-5653656 | Vesicle-mediated transport | 40 | 762 | 4,46E-08 |
R-HSA-983705 | Signaling by the B Cell Receptor (BCR) | 18 | 176 | 1,09E-07 |
R-HSA-975634 | Retinoid metabolism and transport | 10 | 44 | 1,67E-07 |
R-HSA-9824443 | Parasitic Infection Pathways | 21 | 254 | 2,17E-07 |
R-HSA-9658195 | Leishmania infection | 21 | 254 | 2,17E-07 |
R-HSA-174824 | Plasma lipoprotein assembly, remodeling, and clearance | 12 | 76 | 3,28E-07 |
R-HSA-6798695 | Neutrophil degranulation | 29 | 478 | 3,29E-07 |
R-HSA-6806667 | Metabolism of fat-soluble vitamins | 10 | 48 | 3,37E-07 |
R-HSA-6802948 | Signaling by high-kinase activity BRAF mutants | 9 | 37 | 4,48E-07 |
R-HSA-446353 | Cell-extracellular matrix interactions | 7 | 18 | 6,28E-07 |
R-HSA-354192 | Integrin signaling | 8 | 28 | 7,50E-07 |
R-HSA-5674135 | MAP2K and MAPK activation | 9 | 41 | 1,06E-06 |
R-HSA-9656223 | Signaling by RAF1 mutants | 9 | 42 | 1,15E-06 |
R-HSA-2871837 | FCERI mediated NF-kB activation | 16 | 167 | 1,29E-06 |
R-HSA-9649948 | Signaling downstream of RAS mutants | 9 | 47 | 2,92E-06 |
R-HSA-6802946 | Signaling by moderate kinase activity BRAF mutants | 9 | 47 | 2,92E-06 |
R-HSA-6802955 | Paradoxical activation of RAF signaling by kinase inactive BRAF | 9 | 47 | 2,92E-06 |
R-HSA-6802949 | Signaling by RAS mutants | 9 | 47 | 2,92E-06 |
R-HSA-198933 | Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell | 18 | 230 | 4,04E-06 |
R-HSA-3000480 | Scavenging by Class A Receptors | 6 | 19 | 1,42E-05 |
R-HSA-5686938 | Regulation of TLR by endogenous ligand | 6 | 21 | 2,51E-05 |
R-HSA-430116 | GP1b-IX-V activation signalling | 5 | 12 | 2,74E-05 |
R-HSA-2454202 | Fc epsilon receptor (FCERI) signaling | 16 | 218 | 3,46E-05 |
R-HSA-6802952 | Signaling by BRAF and RAF1 fusions | 9 | 66 | 3,98E-05 |
R-HSA-174577 | Activation of C3 and C5 | 4 | 7 | 7,74E-05 |
R-HSA-446388 | Regulation of cytoskeletal remodeling and cell spreading by IPP complex components | 4 | 8 | 1,30E-04 |
R-HSA-2187338 | Visual phototransduction | 10 | 100 | 1,71E-04 |
R-HSA-977225 | Amyloid fiber formation | 9 | 81 | 1,71E-04 |
R-HSA-9657689 | Defective SERPING1 causes hereditary angioedema | 3 | 3 | 1,71E-04 |
R-HSA-9657688 | Defective factor XII causes hereditary angioedema | 3 | 3 | 1,71E-04 |
R-HSA-6802957 | Oncogenic MAPK signaling | 9 | 84 | 2,24E-04 |
R-HSA-216083 | Integrin cell surface interactions | 9 | 85 | 2,45E-04 |
R-HSA-9029569 | NR1H3 & NR1H2 regulate gene expression linked to cholesterol transport and efflux | 6 | 38 | 5,79E-04 |
R-HSA-9679506 | SARS-CoV Infections | 23 | 509 | 6,51E-04 |
R-HSA-1280218 | Adaptive Immune System | 33 | 879 | 7,31E-04 |
R-HSA-445355 | Smooth Muscle Contraction | 6 | 44 | 1,27E-03 |
R-HSA-9024446 | NR1H2 and NR1H3-mediated signaling | 6 | 48 | 2,01E-03 |
R-HSA-3000484 | Scavenging by Class F Receptors | 3 | 7 | 2,05E-03 |
R-HSA-9662001 | Defective factor VIII causes hemophilia A | 3 | 7 | 2,05E-03 |
R-HSA-5602498 | MyD88 deficiency (TLR2/4) | 4 | 19 | 3,02E-03 |
R-HSA-5627117 | RHO GTPases Activate ROCKs | 4 | 19 | 3,02E-03 |
R-HSA-70263 | Gluconeogenesis | 5 | 35 | 3,23E-03 |
R-HSA-5603041 | IRAK4 deficiency (TLR2/4) | 4 | 20 | 3,23E-03 |
R-HSA-1474244 | Extracellular matrix organization | 15 | 300 | 3,23E-03 |
R-HSA-9668250 | Defective factor IX causes hemophilia B | 3 | 9 | 3,54E-03 |
R-HSA-159763 | Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus | 3 | 9 | 3,54E-03 |
R-HSA-5627123 | RHO GTPases activate PAKs | 4 | 21 | 3,65E-03 |
R-HSA-1643685 | Disease | 59 | 2101 | 3,83E-03 |
R-HSA-70171 | Glycolysis | 7 | 80 | 4,49E-03 |
R-HSA-3299685 | Detoxification of Reactive Oxygen Species | 5 | 39 | 4,71E-03 |
R-HSA-381183 | ATF6 (ATF6-alpha) activates chaperone genes | 3 | 10 | 4,79E-03 |
R-HSA-159782 | Removal of aminoterminal propeptides from gamma-carboxylated proteins | 3 | 10 | 4,79E-03 |
R-HSA-159740 | Gamma-carboxylation of protein precursors | 3 | 10 | 4,79E-03 |
R-HSA-196854 | Metabolism of vitamins and cofactors | 11 | 192 | 5,88E-03 |
R-HSA-159854 | Gamma-carboxylation, transport, and amino-terminal cleavage of proteins | 3 | 11 | 6,28E-03 |
R-HSA-373755 | Semaphorin interactions | 6 | 64 | 7,36E-03 |
R-HSA-9636667 | Manipulation of host energy metabolism | 2 | 3 | 7,66E-03 |
R-HSA-9672391 | Defective F8 cleavage by thrombin | 2 | 3 | 7,66E-03 |
R-HSA-381033 | ATF6 (ATF6-alpha) activates chaperones | 3 | 12 | 8,04E-03 |
R-HSA-3000170 | Syndecan interactions | 4 | 27 | 8,07E-03 |
R-HSA-446728 | Cell junction organization | 8 | 118 | 8,07E-03 |
R-HSA-75205 | Dissolution of Fibrin Clot | 3 | 13 | 8,07E-03 |
R-HSA-1236974 | ER-Phagosome pathway | 7 | 93 | 8,40E-03 |